Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs59626664 chr12:56636975 C/G 9.68E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs59811639 chr12:56695954 C/T 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs59822547 chr12:56644886 A/G 1.09E-7 177 25.17 27.33 0.8 KM Plot
PCPG rs59863111 chr21:34606972 GGGTTTGTCT/G 0.000294 172 21.9 31.97 25.17 KM Plot
PCPG rs59889656 chr3:39168309 T/A 7.83E-7 178 25.87 20.47 24.72 KM Plot
PCPG rs59917308 chr12:56658708 C/T 1.24E-7 176 25.08 27.33 0.8 KM Plot
PCPG rs59959484 chr1:56345876 C/T 2.43E-5 170 25.87 26.12 13.27 KM Plot
PCPG rs5997038 chr22:21279805 A/G 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs5997064 chr22:21299577 G/A 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs60012050 chr8:6734378 AC/A 1.34E-6 172 10.73 19 27.3 KM Plot
PCPG rs6004914 chr22:21274587 A/G 2.42E-5 176 12.93 31.9 25.4 KM Plot
PCPG rs6004917 chr22:21275859 A/G 4.21E-6 178 25.2 31.68 12.93 KM Plot
PCPG rs6004944 chr22:21282756 C/A 2.05E-5 178 12.93 31.68 25.2 KM Plot
PCPG rs6005013 chr22:21301992 G/A 8.42E-5 176 12.93 31.47 25 KM Plot
PCPG rs60053485 chr1:244157197 T/A 3.77E-5 171 27.95 20.13 9.48 KM Plot